PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC606_p8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 185aa    MW: 21156.2 Da    PI: 9.598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC606_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-2051101256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  RrC606_p8  51 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 101
                59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-3450110No hitNo description
PROSITE profilePS5103223.23551108IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-2451109IPR016177DNA-binding domain
SMARTSM003802.8E-4151114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3351109IPR001471AP2/ERF domain
PfamPF008471.6E-1452101IPR001471AP2/ERF domain
PRINTSPR003671.0E-115263IPR001471AP2/ERF domain
PRINTSPR003671.0E-117490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MMQYWRDILN LSPSGRMMMM NMLRQEGNDL PLPLPLQLTR PLIQPFSATK LYRGVRQRHW  60
GKWVAEIRKP RNRTRLWLGT FDTAEEAAMA YDREAFKLRG ETARLNFPEL FLNKQESTPL  120
HQKQSAAEAS ERGNDDLSVA AGGVSDETGW AEAWFRSNGS FVGVSTFPIP LLSWITLDNI  180
SISQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2150116470ATERF1
3gcc_A2e-2150116470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884229.18e-84hypothetical protein ARALYDRAFT_900468
SwissprotQ9SKT13e-83ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLD7L5C09e-84D7L5C0_ARALL; Putative uncharacterized protein
STRINGscaffold_304438.12e-83(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-77ERF family protein